NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211503_10075027

Scaffold Ga0211503_10075027


Overview

Basic Information
Taxon OID3300020478 Open in IMG/M
Scaffold IDGa0211503_10075027 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2039
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.49Long. (o)39.8483Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043627Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0211503_100750276F043627N/AMTKWLVADTSAVQGGKIEHRIPERPLLHVCCNRDHFGDVNLDRDPSVNPDVVADVTERLPFEDDEFAASFADFPWVKNWMQNTSKALKEMLRVAPVAYTISPWLYGAKWCYPESIHVSWRPGVNYPILFVKYVRRGNNETDLS
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