NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207418_100146

Scaffold Ga0207418_100146


Overview

Basic Information
Taxon OID3300020483 Open in IMG/M
Scaffold IDGa0207418_100146 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17155
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030020Metagenome186Y
F085386Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0207418_10014620F085386GGAGGVNLFDHAEAQRRKEIGKALAADRRHELLATARGFAAFLAREYGTVTADDVAELMAANNLDYADLGNAAGSVFDAKFQWTGRVVPSKRPSTHGRLIREWSLA
Ga0207418_1001468F030020N/AMRLQVALFLALAACNPVARISANATAIRNEAGALIDHGNAIGDQVVVQGATRIDAAATAIHGDIPSVQAITPAWLSTLKWWGIALAVAGVAFVLWQSGAFTAIRIAVGWLPRRKVATAELALDTLDDSRPENDRELVAALRADPEFDAAFRKAQKRRKTQE
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