NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207418_100326

Scaffold Ga0207418_100326


Overview

Basic Information
Taxon OID3300020483 Open in IMG/M
Scaffold IDGa0207418_100326 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8933
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Associated Families15

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F002489Metagenome / Metatranscriptome554Y
F002598Metagenome / Metatranscriptome544Y
F003379Metagenome / Metatranscriptome490Y
F003690Metagenome / Metatranscriptome473Y
F004431Metagenome / Metatranscriptome438Y
F004840Metagenome / Metatranscriptome421Y
F006744Metagenome / Metatranscriptome365Y
F009143Metagenome / Metatranscriptome322Y
F017134Metagenome / Metatranscriptome242Y
F045755Metagenome / Metatranscriptome152N
F074868Metagenome / Metatranscriptome119Y
F085708Metagenome / Metatranscriptome111Y
F092052Metagenome / Metatranscriptome107Y
F093318Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0207418_10032610F002598AGAAGGMATKLYTIESLLVGKNYRSNSRHFSGEIVSAEARPEIYYGEKTEAYLIEIRTGGLRNKFATIAVKVGE
Ga0207418_10032612F001562AGGAGMKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMENE
Ga0207418_10032614F074868AGGMSDPPAILATYKQKERWSQMTTLEKTNIGLALGISGALENRILHDWNNGGAKSTYGLSVYQRKVLLKVLIRENPKCECVACI
Ga0207418_10032615F085708AGAAGMTTNRLLTTAVQIGIGIPTLLMMRLMWREIVADFREWDKSH
Ga0207418_10032616F003690GGAMIADGLELYITSDYGLELDSFLGAIYLPWHTIIITALVITAYKIYKRKKNK
Ga0207418_10032617F009143AGGMMTKWDTIQADVADAYVYIDEEEAYNKALAEGVDFGADDFDDDELHKSLTLDWND
Ga0207418_10032618F004431AGGAMTITYSLWDGAQLLGVDFTANSADEMNKVVADLQKVSTNVVAHMRKVSM
Ga0207418_1003262F017134GAGGMELFTVACLNSEICGTTMTFDSESDYEVFGDDYMCAECYDSEEMEFYELTGWSDSDALASAGHGMDEDY
Ga0207418_10032621F003379GGAMKKIYALIALTATAVLSGVALSKFLNWAGQIEIFDFDLDEDIDLEDF
Ga0207418_10032627F002489GGAGMEEKEPQSLEDNLPMVNYIMLHRIYDMLTLVAKGAVGGEEVGKMIQYHKEGFLLGPSPSYSIDEREENGE
Ga0207418_10032628F092052GGTGGMLDKCKNGQCACEQEENFFHIKVIPQNSANFSAADEETFSSYEFESNTLTETDSMGREKFWEDMGRP
Ga0207418_10032629F093318AGTAGGMKVQYVSKYLSLSQEGLVPELLCPMDQGSLYPNQDGEDRVFVYCLSCNYKKVLGSKDYDNIVKAVENVG
Ga0207418_1003265F004840GGAMYKLTCAYDSNAPHWSAEYENEFGAWESFFRFTDWGMANEYSTVNLSTPTGKMYTKVFYRNGMVSVK
Ga0207418_1003266F045755AGGAGMSEIAGMWICDNCDTLAVVSVLTDTIQITQCKCVTNERETNV
Ga0207418_1003268F006744AGGAGMNLDEFKKHVIAQREASKAEALSVLSATITKSTNERENL
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