NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000010

Scaffold Ga0208050_1000010


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000010 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79792
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (79.57%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F001562Metagenome / Metatranscriptome670Y
F004431Metagenome / Metatranscriptome438Y
F005000Metagenome / Metatranscriptome415Y
F013527Metagenome / Metatranscriptome270Y
F037095Metagenome / Metatranscriptome168Y
F103268Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100001012F000369AGAAGMSEIEPAVQFDKMNRVVSELLKGNSATQIASITGLTRKEVLEHIDEWKSIVHNDTNVRDRAREALLGADQHYDMLIKEAWKTVEDADTQGQLNVKSGTLKLIADIETKRIAMLQSVGVLENNEMASQILETERKQEMLVGILKEVTSSCNHCKIEVAKRLSQITGIVEPIIILEKTSDV
Ga0208050_100001026F005000N/AMTHKRIKRFQIEVEFYDNAQLISLKPQYENLLIQDMRGKGYVRVLDIDPAFSIEFTGETWKFLMTLHGVYVGKRKAWQSEGITQSKLIPRNMPQVISNQS
Ga0208050_100001044F103268GGAGGMTNYGIDAMYEIRKHLWQELLSNNIIDQNAYYSDNLGESIIPIIPVQQAPEMNQFLSGKTHIVYDKIGSTYEENWLICCEKISFTIYSVDFAEINIIRNMMMDVFRRMDDSARDLNKSRSTDKIIFHNTLILEMSPTEPSTELAGFLAADVIIEVKYSRTVGPKGRFD
Ga0208050_100001073F037095GGAGMAIKNFDKADLNKDGKVTMQEQILSALGSYGRAFLAAAMALYMTGNTDPKDLVAAGFAAIAPVILKALSPSDHSFGFKSK
Ga0208050_100001089F004431N/AMGELTMTITYSLWDGAQFLGFFTATSADEMLKVVSDLQKVSKNVVAHMRKVEQN
Ga0208050_10000109F000376GGAGMSEYQEKAKECKCCTKHVPLPTKMKEYNNIIMCPTTYYNVIEYKRIWDSYGSRPAGSVRKHFSEYVQSIVESSIDTQN
Ga0208050_100001091F013527AGGAGMAVYEFNAFINVEAESYDDAIDTFQFQLKYGINQNNVYVADIRDLELSE
Ga0208050_100001092F001562GGAGMKSDFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHADYLAEMENE
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