NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000054

Scaffold Ga0208050_1000054


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000054 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35753
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (89.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025266Metagenome202Y
F038150Metagenome166Y
F051781Metagenome143Y
F057202Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100005429F025266AGGAMNTRHPEPAIVTHYRATVNAEPPRVCHTCDHYRPDGVCAEYNDTPPPEFASEPGGCALWEWEVPF
Ga0208050_100005439F057202AGAAGGMTLMQQFKRMTRRLTPVEMAATELAEAELHRLEAHSAMEYASSVVSYEDARIKRLRKFLADAEKAV
Ga0208050_100005440F051781GAGMSILEEIKVNRTPTHMVRTPSLTLSREARQSMGKYTERKKLAGEVKAAENDLWQRGQYKTGDGDYTAQVPREGSLRAFSLPSRGNRT
Ga0208050_100005449F038150GGAMTDDDFRRLESKVDKLTDAVGKLILIEERQANQGVRIGAVEAQLSVQDAMLQRVDRKVDQWVNRGVGIWAAVAVVFSLVQFWKK
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