Basic Information | |
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Taxon OID | 3300020498 Open in IMG/M |
Scaffold ID | Ga0208050_1000114 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18810 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024291 | Metagenome / Metatranscriptome | 206 | Y |
F047555 | Metagenome | 149 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208050_100011410 | F047555 | GGTGG | MSLTATVEARVKARSTTTSGLTASIDDHPLSFFFDVGDCTTVWSDRRTFPSGIDEIDFSAIGVGTVKLLCLKNLSSTSQIALSAGWTGSQFSVFRQDVTSWNFSPLINLGALTLRGYPIREGGAFLLSCPNSAGFATTSGGSILRVGGTAGQQYEIYVMGT |
Ga0208050_100011415 | F024291 | AGGAGG | MAGVSAQGLTFSFGGSNLTVTSVQVNDTQDLIDGSHLGIAPNGRREYVGGFATDREVQIDYISTTILTAGVSGSLSISGPLSFSGNATIASSSIGGSVGALVSGSATFRVA |
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