NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000114

Scaffold Ga0208050_1000114


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18810
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024291Metagenome / Metatranscriptome206Y
F047555Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100011410F047555GGTGGMSLTATVEARVKARSTTTSGLTASIDDHPLSFFFDVGDCTTVWSDRRTFPSGIDEIDFSAIGVGTVKLLCLKNLSSTSQIALSAGWTGSQFSVFRQDVTSWNFSPLINLGALTLRGYPIREGGAFLLSCPNSAGFATTSGGSILRVGGTAGQQYEIYVMGT
Ga0208050_100011415F024291AGGAGGMAGVSAQGLTFSFGGSNLTVTSVQVNDTQDLIDGSHLGIAPNGRREYVGGFATDREVQIDYISTTILTAGVSGSLSISGPLSFSGNATIASSSIGGSVGALVSGSATFRVA
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