NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000282

Scaffold Ga0208050_1000282


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8991
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028146Metagenome192N
F051072Metagenome144Y
F081254Metagenome114N
F085379Metagenome111N
F104765Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100028210F104765AGGAGGMKAAEIIAICSIMLSAGIGAGFFWGLRQGERIGRDREWMDSFFRSIKRDAERRDKAGRFKKR
Ga0208050_100028213F028146N/AMETTHEIKKAAVIAAASEQVRALLETHYDAMRKAAEESFVDDESQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESESVVDPLQAKLEIGGAE
Ga0208050_100028215F081254N/AMTDQHAEQIIAELRAIRALLANKPAAPAAASAPAPAGAPKEIPQPTEIVADPGSVEVHFGKNKGTPLRSLGAKSVEWYAQEPEPRIGNNGKPFPPRPEDVRLRNAARQLVHGNRGTLAAGTRVTLVSETLTEEVPF
Ga0208050_100028216F051072N/AMNNNFNRSNPIKNLTGGGHSAARYTGTHGHVERSHYWVFIPGEGWVTWREIHRQVTASFRDWEMRHILGLRKPKAKTQ
Ga0208050_10002829F085379GGAGGMSARPNPKSEVIDEMVARFAPFKEILAEVRMQQAAVRQRIYNRGYRREYITHEERAHLLRRRGVKL
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