 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020498 Open in IMG/M |
| Scaffold ID | Ga0208050_1000490 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6273 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003134 | Metagenome / Metatranscriptome | 505 | Y |
| F005697 | Metagenome / Metatranscriptome | 392 | Y |
| F014089 | Metagenome / Metatranscriptome | 266 | Y |
| F021065 | Metagenome / Metatranscriptome | 220 | Y |
| F025683 | Metagenome / Metatranscriptome | 200 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208050_10004901 | F021065 | GGGGG | MTLTRAEEFVCHKAALELAKDNNDYWQTREGGYSMDKSFHDLIAQDAQSIGSEWVVAKYLDLPFNPYENKYKMKADVGSHFEVRWTKYVAGHLVVHEYDRPSDVAILVTGESPNYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGNNPV |
| Ga0208050_100049010 | F003134 | N/A | MTQWNPVWLVEIDGVAYTDAVLANLVIRSGRTNIYEQAQAGYVNLQLLDVNQTAIPVSINSTIGVSIKDTSGAFVAIFGGNVVDIGLEVRDVGSSTFTQTYNITALGALARLPKSLTNGVLSKEFDGDQIYDILSQVLFGSWAQVPGALTWATYDPTITWANAENNGLGEIDRPGNYELAARSSERIDVYSLVAALATSGLGYIYEDAQGRIGYADSTHRTNYLAANGYVDLDANHARAAGLRIQTRVGDVRNSLTIKYDATSSSERSASDADSIALYGTLAQIIETTLHNAADATAQANFYLSLRAQPQPIFSQIRFDLTNPELDDADRDNLLNIFMGEAISLNNLPLNMSSGTFQGFVEGWSFQASYNQLSVTLLLSPLAYSLQAMRWNDVPITETWTSVSPTLDWANATIVA |
| Ga0208050_10004902 | F014089 | AGG | MGATGMSDLVEIIYPQSMTAKLLQDGEVIAEYKVAQCDGCAKVMKLDPFGYKIGQGGEKLAWLCGGCR |
| Ga0208050_10004903 | F005697 | AGGCGG | MGFLDNYEASRERLERWLATYPLGCIETRIVEFSAEKGYVLVEAKAWRKDTDEKPAGVDYAYGYQAAYQPNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTTAKVANTEKDYDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVKEAPQCSHGHMIWKQSHDGSPKTWGGYFCTEKTKATQCTPRWYVLRSTGKWEPQV |
| Ga0208050_10004904 | F025683 | GGAG | MVLDLLDPQTLGRLVLVIILMVLGAAAGYAKGFKDGKREGMARRKAMVRHLSNKAVN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |