NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000808

Scaffold Ga0208050_1000808


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000808 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4639
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016369Metagenome247Y
F050232Metagenome / Metatranscriptome145N
F075707Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10008081F075707N/AMSQLLLGIFILIAVYIVGWHQLYGQFIHSFYKKYEMWLIWLSVPNTLLSIYATKLLTEYFEGKMWPNRIFTFSIGIVMFTILTTIYFNERLSLKTLTLVGLCGLIVTLQVLW
Ga0208050_10008085F050232GGAGGMKYKYSVRIHNVSTTEELETIMNEYGSKGIRVIKADFLGSKLVNCRQEARYTLYLEEKIK
Ga0208050_10008089F016369N/AVKNNKAFTLIELVLAITILLGIIGAIVINYDSLVGNSRYFEARENLKTYLINLKYQSAFRQKEFELTFDPDYNMYSSFEDFYLLDAVTNDLKILETSATKIVFFLDGSVQESYIVTSNLEGTITNKFIINVIGDVKYEGYTNDIIEKKESEF
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