NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1001057

Scaffold Ga0208050_1001057


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1001057 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3982
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035738Metagenome / Metatranscriptome171N
F068838Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10010573F035738N/AMKSNELKELIRSVIKEELNKTLPTLIPKVLTEILSGNQSSVIQSTEPTNLTKNVVKESVQKPKEVKKYSSNPVLNEILNQTVVKIPSEGSMAGLDSSFKSQAFAGMRMNESVETPQQAAPVTEEQGKVMNVLNRDFRSLMKAVDKKKQHGTLGSGMVSMG
Ga0208050_10010575F068838N/AMPYFNIKSSPISFGQLNNIGLSVGNQSSNAASTNEFYELEPAIVLDVILDETHPEIVNKRHLVDVRNIPANYKNELPDQKDIDYSYIGACRVRLCFSQQGLEKEKLSWAFPMESTGIVEYPLLNEVVIVVKYLDKLFYTRKLNLNGFINQESNFRLEKFYGNNDGNKDLVSEDGLKTESVEGPVSLNSFKKISNNQVKGVLGAYFLANSKIRKLRRYEGDTVLESRHGQSIRFSAYDNIRENDKGFYSDYKGDPTVNKSNEGCGNPMVLIRNRQRKLSLDKPISDNSKLPPIPAIIDSQKNAGGLIDEDINHDGSSIHITSGLTKSKWRTTCYKSIFQQGKEEQPLFSPIGSTAFNFDIENLKGDQIVINTDRLILSSRFGETLHFSKERYGIVTDSEYTVDAHDQIVMTTNNKTVFNSPAIYLGQYGQTNEPVLLGQTTVDWLYDLCNWLLNHVHWYNHTHPKTGNANPNKTQESVQDQQLKFLRDNLDKLMSRRVFVTGGGYAPGVDGVTPEGFKNATAPISVNIVSGQGLPGIFKGKVRREGPVEVQYEES
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