Scaffold Ga0208050

Basic Information
Taxon OID	3300020498 Open in IMG/M
Scaffold ID	Ga0208050_1001191 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020498 Open in IMG/M

Scaffold ID

Ga0208050_1001191 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3721
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

3721

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003603	Metagenome / Metatranscriptome	477	Y
F013184	Metagenome / Metatranscriptome	273	Y
F024786	Metagenome / Metatranscriptome	204	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100119110	F024786	GGAG	LPVYRVFGTKYQNYYTIIEAADQFEAVDLANALPETEWNSILTDDVIEATDVYLNEDTSNELQLNI
Ga0208050_100119112	F003603	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGLVSEGLALAYKLDQVVDKIKEKNTFNNLKLPITNQERKAIIDRMPKEKTGDYKYSWLHETNNTNKQYIDQSYM
Ga0208050_10011912	F002387	AGGAGG	MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDRFIQDEFNKFYNLKEGDEDYL
Ga0208050_10011913	F013184	GAGG	MRSYDFVIKLAGSVMANNEKEAHNKINAHLDDLGEVDSTRYDLGWPDVSWDMEYDLC
Ga0208050_10011914	F001460	GGAG	MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDHTN
Ga0208050_10011915	F050154	AGTAGG	MKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNETREN
Ga0208050_10011916	F000263	GGAG	METTTLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQDLADALEQEERSEEAMDSMVRTECEGRLDMLVELYQLTYDLSFAIGARNEA
Ga0208050_10011918	F000441	AGGAGG	MKMSDEYINDQLNKAQKLLWGGSETENIEAHNIISKLIRDRMSEKEGTND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208050_1001191

Overview

Ecosystem & Geography

Associated Families

Sequences