Scaffold Ga0208050_1003429

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208050_1003429

Scaffold Ga0208050_1003429

Overview

Basic Information
Taxon OID	3300020498 Open in IMG/M
Scaffold ID	Ga0208050_1003429 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2032
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006063	Metagenome / Metatranscriptome	382	Y
F035676	Metagenome	171	Y
F052461	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10034291	F052461	N/A	KAGVVSGKQSSVGLQLNAKGYLCLVSRSAPDAIKIIEDYLNGKSTNAK
Ga0208050_10034294	F035676	GGA	MSWELSAGSDLSGKGMKSNFVNNHVRLNGNVHGHKLRLCNKCEEKKPPEGGVQMSASRWICASCWTNWETGRQLKEMGK
Ga0208050_10034295	F006063	AGGAG	MTDLLTALHLSVMLLDLKIRMMEAIEEERFDLAMTMHLLILVRTDELEAHKWAMSPKAWAIYETIHP

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