Scaffold Ga0208590

Basic Information
Taxon OID	3300020501 Open in IMG/M
Scaffold ID	Ga0208590_1000035 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020501 Open in IMG/M

Scaffold ID

Ga0208590_1000035 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31674
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (14.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

31674

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (14.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002391	Metagenome / Metatranscriptome	564	Y
F003127	Metagenome / Metatranscriptome	506	Y
F004474	Metagenome / Metatranscriptome	436	Y
F032999	Metagenome	178	Y
F058091	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208590_100003516	F004474	N/A	MSTMNYLLSVENLKKLGLIHNNTDTKLLAVAIKRSQDMHVQPALGTPLYKALLNRVETSTWTQDYLDLMNDYVVPCLVAFVDYRCALLLNEKLTNKAVGRVQDENLQPNTDSEQTAFRDQLRKDAYFYKERLIGYLMDDQGVKYPEYIEGCEDLTCNENVKKDRSGYKPINWQI
Ga0208590_100003520	F003127	N/A	VSCNMTTGYNDRTCTNGKGGIKSVILFPLGNVSASTITNNEVTSLTVTGEVFQYKLKSNLSSYTAPIQVNKDNGTLWYTQTLTMILASDTKELRSEIHLLAQNEVVCIVEKASGEYVALGFGEGLQIADGSAYGSGTVKSDRNGHDLVLTGMENDEVPDVDATVVATLLTQQSPSI
Ga0208590_100003528	F002391	N/A	MSLELSVISANQGTFIVNDTTEKTISHDAIVVLEDTVFNSIKIGGVDVKSSYISTTGTAVKAGAIIRPINAQKFSAVDLVSGSVCLVL
Ga0208590_100003541	F058091	N/A	VEFWKKEAYIIANKITGGNHLHHDLVPHVYLLLAKLNIKEQDLPRVFARWAYNQYNWKESKFNQLYRGSVPIPEGFDKIAEEDVYNETQYQQILDAYLEQSPDNDEELFCKEITKMRLMGMTYREIKGLTGINLDTINKAINKFKYDIHHSSFISGDCQSSPHFSDARHQAI
Ga0208590_10000356	F032999	N/A	MSSADYEYWWQRSGRFNMELFNNYLRAKRNAEFQSNIQSKGWQMDQVDQDHPSQQPRGCCQTHGHVASVNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208590_1000035

Overview

Ecosystem & Geography

Associated Families

Sequences