NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208590_1024135

Scaffold Ga0208590_1024135


Overview

Basic Information
Taxon OID3300020501 Open in IMG/M
Scaffold IDGa0208590_1024135 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)687
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031494Metagenome182Y
F070106Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208590_10241351F070106N/AMKKSKKIFVIFNPHTNGYYDGYGYFRDILFSKTYTEKEVAISEMWKILDDSIGKTFLKIRSF
Ga0208590_10241352F031494N/AMQVIIILSTDVSPDIADLILGYKLEGGYSIDYALNSLVSYYKGQEIIIFNFSKYFVLDNRWSGYKIDDYGTKIVINFI

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