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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020504 Open in IMG/M |
| Scaffold ID | Ga0208484_1000601 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8232 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (21.74%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026798 | Metagenome / Metatranscriptome | 196 | N |
| F038078 | Metagenome / Metatranscriptome | 166 | N |
| F043767 | Metagenome / Metatranscriptome | 155 | N |
| F057882 | Metagenome / Metatranscriptome | 135 | N |
| F062460 | Metagenome / Metatranscriptome | 130 | N |
| F069678 | Metagenome / Metatranscriptome | 123 | N |
| F073069 | Metagenome / Metatranscriptome | 120 | N |
| F085120 | Metagenome / Metatranscriptome | 111 | Y |
| F093242 | Metagenome / Metatranscriptome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208484_100060113 | F062460 | N/A | MNLEESIIEAVTTAVKEIRQESCIKKQVKSLMKIYDAIVVKDHETSTESSLKTTRKRKRSISHE |
| Ga0208484_100060114 | F069678 | N/A | MSNQEQLAEGTSSTETLVNTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPRWSINGTKRNLDKPIKSRNIGLPTNSSESESENERPDDRTMTSTAHAYR |
| Ga0208484_100060115 | F093242 | N/A | MEYSNSEKDKIMNIIQDSMNRIDTNTNYNYNYENFLRIYAAMRKLKTKEPGLKFKVSKIPTNEDNHFFKKRNEN |
| Ga0208484_100060119 | F085120 | N/A | MKNQVRIIQLLNRLEKMLKIEVEKARTDQDNDAIKLLEKLYKLTKKTKVNYSTQKH |
| Ga0208484_100060121 | F026798 | N/A | MDKSKEKLIFHNCTEESSKSKRGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKLVNSLNDKQNFQDMNNQLKLQILFNTVLKLKRVYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKIIENWYKLMKVQESP |
| Ga0208484_100060122 | F043767 | N/A | MENQEQGQSNGHSLLFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEMATSEHNIQVYEAIRERLKMLKTIDPERKIHQDTLVETTVIKYDCPMCLPTDDSNYEIELDS |
| Ga0208484_100060123 | F038078 | N/A | MAAKGDKCTVRMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKARVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEKWDSKNNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSTREDREDTISSSISKLNI |
| Ga0208484_10006014 | F057882 | N/A | MSCENNLKEFDHPEYGILDPAQVRELRDELTRCFIDYIGGLSNHLRERKTVDIEEDRVTKFHYLRVCATIQNLNKIDPEWCLRYSAPDDECLKIKLHDCKCCFHTCQKFDEVMQSSKNSSNKSSQTEDKESTQE |
| Ga0208484_10006016 | F073069 | N/A | MTSKDTVIAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSIAKIAKEKVEVANKQLNKDMSKETRSILKENFILMYEINIKLVDLKLMYEYIITKMISAEITEGMLTEARMRKWTRFY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |