NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1000111

Scaffold Ga0208091_1000111


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1000111 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18903
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F003379Metagenome / Metatranscriptome490Y
F071247Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_100011117F003379GGAGVKKVWALITISATAILSGLALSKFLKWVGQQEVFDFDLNEDIDNDEWNKD
Ga0208091_100011122F071247GGAGMGSNNKIPFNPTVIKNGRIIRIRKDGTIKADLGPVKSNKKRIKNV
Ga0208091_10001117F000376AGGAMSMYQEKAKECICCGKHVPLPIVLKDYNGVKVCPTTYYNIKEYSRIWTSIGSRPTGGIRKHFSEYVQSLVEIEKSNESV
Ga0208091_10001119F000369N/AMEIELSDHFDRMNKVVEELLKGSNPAQISSLTGFKRAEVVEYIDEWKSIVKNDSTSRDRAKEAVSGADQHYAMLIKEAWKTVDDADQQGQLNVKATALKLIADIETKRIAMLQQIGLLDNQEIADQIAETERKQDVLVSILRDVAKDYPDIRREIMKRLSQITGVVEPIEIIESKNVI
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