NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1000206

Scaffold Ga0208091_1000206


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1000206 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12934
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F003643Metagenome / Metatranscriptome475N
F014129Metagenome / Metatranscriptome265Y
F043387Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_100020613F002489AGGMNEEKEPSQNLEDNLPMVNYIMLHRIYDLLVLISKSVAKPEEVQKMIDYHEKGFLLGPVPSFTSVDSNEDV
Ga0208091_100020617F003643AGGAGGMTKDLKKNGLVEMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVILKALNPNESSFGFTKK
Ga0208091_10002063F043387GAGGMMTKWDTIQADVADAYVYLDEEEALNKINAEAISDSDIVSLDEIIENELTLDWEAYE
Ga0208091_10002066F014129AGGMTTLIREITLSNVRADEANLIVCVFCSDYASEMFCGKCKEYKGLMTLGEWLAYTQESWVM
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