Scaffold Ga0208091

Basic Information
Taxon OID	3300020506 Open in IMG/M
Scaffold ID	Ga0208091_1000284 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020506 Open in IMG/M

Scaffold ID

Ga0208091_1000284 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10367
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (72.73%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10367

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (72.73%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y
F013887	Metagenome / Metatranscriptome	267	Y
F037698	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100028414	F013887	N/A	MYLSKAIRLLKPTAEFSINNDDYNTVKWDSLEGDAPTKKEIDDAIKQIKADEIAAAEAKATAKATAQAKLAALGLTVEDLQALGL
Ga0208091_100028416	F000468	AGG	MTVWTPDWKLSVAGVDYENITIADIAHQAGRDDIYTQPNPSYLQVEVVALSGQTLPFEINDGLTLQVKNSAGTFVSLFGGNITDVTVEVRNTGSVSNVISYTLLAMGSLVKLAKEIYTDNLSQDIDGDQIYTLLSSSLLNTWNEVPAAETWSGYSPTETWANAQNIGLGEIDAGLYTMSSRSANPDTIYNIASQIADSALGYMYEDNQGNIGYADADHRQTYLLANGYTELSANTALGSGLRTLTKSADIRNDIYINYGNNFNNEATATDTASIALYGYKGETINSAIHDGTDAQEIADRYISLRAYPYATFDSITFPITNSEIDNADRDALLGVFMGQPIHVTDLPFQINNGAFEGYVEGWRWSTRFNELFLTINLSPINFSQVAMRWNTVPVTEAWNTIGNTLTWEYATIVA
Ga0208091_10002842	F037698	AGGAG	MCANHDEMTHQINWAYQNKLRKQWLLDNPDAQYIGWMSI
Ga0208091_10002843	F002162	N/A	MPNYDYMCDGEGSLIVLDLPMDHKIPHCQVCNKPLRRVFTAVPTIFKGTGWAGKDG
Ga0208091_10002844	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGVVVEPSVVTCDLCNDDRLLHEGDLLRCYSCHAINRIPYHA
Ga0208091_10002845	F002357	AGGAG	MAFNLEDYEDVATLNKWLISNYPMFRSDLSVISHDPEKGYILIQATLWRDSKDAAPAVSNVAFGSRETYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESNPSFKEKLESRQNMYGKPGSKSAQIETILRDSFAADKKEPEPVAWSVGDVVDQIGSSIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECPPNWATLTANGKWYFKGGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208091_1000284

Overview

Ecosystem & Geography

Associated Families

Sequences