NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1000346

Scaffold Ga0208091_1000346


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1000346 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9093
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011285Metagenome292Y
F028785Metagenome / Metatranscriptome190N
F042302Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_100034621F011285N/AMRYVFILLMLMSCTRDMSFDPTVTISKEIIKFLYNESNKEEPAAE
Ga0208091_10003464F042302AGGMLETINELYDYFITFASLSLLLVALFYWIVLLINRKQEKDFDTKYRETRKK
Ga0208091_10003465F028785AGGAMRPIRKQELDYLDRLINNKFQEKQSAIRSQCELEVGKQLEKDFNKFVSTLRLDKLLKDAEQAEKEYQDFKLSKDAKETALNQNAIKRKQALLEKVNQWSDIRDWSISSRADTVDEVISNLKKACQQELEEKYKNSEKGKFFKYLQNGIEDARNTLYSGLSIDDVWKNLENIFNKAQIEVRVPKSFTQIAK

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