NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1001999

Scaffold Ga0208091_1001999


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1001999 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3128
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018910Metagenome / Metatranscriptome232Y
F059974Metagenome / Metatranscriptome133Y
F091630Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_10019993F018910N/AMKNLITEEFKEKFKAAFARFMNITIVASTLIAGFGLGYYFQELKMKPQAVNETILNKEVRIAIDSEDKLIIMDRKTGQYIIYSDSVGSAIFRMYAAKIANPLTK
Ga0208091_10019996F059974AGGMSKTSNNQKLAVLKIWLEELKRKGKIKKQPNWLKEILNED
Ga0208091_10019997F091630N/AMKIDGNIIEFFDSMPDELLTKLAIYDRDALERICVALTLDIQLLKEEIEREKIRLAS
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