NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1003286

Scaffold Ga0208091_1003286


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1003286 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2327
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023329Metagenome / Metatranscriptome210N
F031460Metagenome / Metatranscriptome182Y
F084152Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_10032862F023329GGAMVDEEKDIAQLEAFFKYNIPNDEILSGRLKILLADLSWRMDLPTWTKEELDVMCARMDALVEVSNLLYDIQWHKLNWERKTNGQSN
Ga0208091_10032863F031460AGGAMAKVIDSVELNVQMWSTVVLSAEEIQDIYPEFADMTDFEDTDELEQALQDHMDMNYLDHIQYADGAMDECTVHFVYEDDGSE
Ga0208091_10032865F084152AGGAMITMDDYKVVDQILPNFLEVGDLIKVKNEVYEVVNLNATPDGWDLIVLDNYEETKTISVPDGKKVNLVLSDEFEG
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