NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208234_1001891

Scaffold Ga0208234_1001891


Overview

Basic Information
Taxon OID3300020515 Open in IMG/M
Scaffold IDGa0208234_1001891 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3274
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019478Metagenome229Y
F022886Metagenome / Metatranscriptome212N
F030763Metagenome / Metatranscriptome184N
F036239Metagenome / Metatranscriptome170Y
F087181Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208234_10018913F030763N/AMLVIKNYKKIKNQYYGDWQIGKVEEMKECYALQAFNANTKKSITMAILREPMMDETEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLTHYLNTL
Ga0208234_10018914F022886GGAMITIKNWDKLTRLFRSQIDIGELELYYEIIYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVRL
Ga0208234_10018916F036239N/AMKIKGWEKISGFTYKGYCIVNPIHDANEEGYFATVLNLNQVYRPKWDITLSAYAVKGVVTFSILDNVTQHLLAKAHLTKVNIETLQQFREQYEMLVDDILEEAQSYTKTKTGTTGPSQGIINQVQNAGTNFTYKSGSISITNMQTAAIQALQTLQQQIDDYNKKL
Ga0208234_10018917F019478N/AMILKIHNTNRMVDTEFWNGRFRCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLVTAKWFGDWKNVTKTFGDALKKQF
Ga0208234_10018918F087181N/AMSFGEIVFAMVMSGIVGLWIYAYMISDGDTMRRIFWDNTAIGWIWREYFSKKKKAKQAPPHFTMGSNSMYINQPLPQPTAFNTSSLNVPHMNHIGKPLVIKNWDRLAGMATMVFGRRWIVVQAFYASSYEFTLQTGGMTKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVGICKDPNRLLHEVTYTFNEKFR
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