NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208721_1001965

Scaffold Ga0208721_1001965


Overview

Basic Information
Taxon OID3300020518 Open in IMG/M
Scaffold IDGa0208721_1001965 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3346
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046994Metagenome150N
F059678Metagenome133N
F061576Metagenome131Y
F081233Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208721_10019651F081233N/AEDRYFRHIKEKDNAKYGGALINPTDALYLYERGWEVKTDWQSDYFTLGKHLDIVHGVYTSIHAAKAHLDKTQHSVMFGHTHRVQCYHSGNRAAFNIGGLYDIKSKGFSYMPRFQRQLWANGFAIVNINDNGDFYVEQINVWADKFLANGKMY
Ga0208721_10019652F061576N/AMQTESKWIRELILSGQTDNIELGLILNDSFNCFPLTRKFYRKHKRFKFWQPSRHYSVLESESRYYSWVALLNNELKTHRAYFWLDFKEPKYKTPWEHWQLHITNYFKWPYNGPMFTGGGHPYTTMFARWRN
Ga0208721_10019654F059678N/AMKTLFFILLFSAAAYAQTDTMYCIQILSTRHPEFIRAEHLAMCTLEQAQVEQTDGLYRIMFVYNTLEEAEIMLTTWKRAHKDAFICRRTSQQVLNFYQFYTYD
Ga0208721_10019658F046994N/AMIFRKRNRAEQNESNYQKWLKTYIPETTKQRIELTRVFTDRTGNNFYILKNPANLTRERAQRIEEAMTAIDFGINKTEVVEKLNGMLETVEEMPWQNMTRDKLKEFHTKSKDQLNDILYRLKNVKIDDLLLEAGLYFFFIDNENPYIINSETQQRKMDAIKKDDELRAFFLNSI
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