NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1004600

Scaffold Ga0208223_1004600


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1004600 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2533
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024290Metagenome / Metatranscriptome206Y
F047649Metagenome / Metatranscriptome149N
F047662Metagenome / Metatranscriptome149Y
F099191Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208223_100460010F047662N/AMHYETDIIIHQYSSDGDFYYKLKVTDVMNMDYYYDGSASTLDDVMECIQLHLKQHQN
Ga0208223_10046002F024290AGGAMTLEEILEEYGQEVLNTYYELFPDKDLTKFPDRFCGPVGDYADFVLDCYYSTGSDELDETVESFENGVFQEYYYYCHNTNTGFVFYNEDR
Ga0208223_10046007F047649N/AMRYYESRTYEHQCDFDAKNRAQKASQDYYNKWINLRKEVRNLVREQNLTITPEFSKLIGL
Ga0208223_10046009F099191N/AMKRNNFDFMDAWTVLIVGTAVLVLLAAPITGVMKVITTQQALNEQCGTNYNFFQVATAGDNLSRLCQIKNQTVTIK
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