NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1007415

Scaffold Ga0208223_1007415


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1007415 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1867
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006935Metagenome361Y
F040624Metagenome161N
F047676Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0208223_10074151F006935N/AMKQQYAKQIIEWAEEAKQYLTIRKEIILDENTTDQQLGSIVRQMYNSKVQTQNETIENTKQNTK
Ga0208223_10074153F040624AGAAGMKSEKVMALYKRKKELQEQIIYWEKFQGVNWLGKWGRSIRLERLKERFAKVEKQIIELKSKK
Ga0208223_10074154F047676N/AMVVLVTFVLTIVFSIGYLVGAKQSTKQLIDKIKKDGGYFDMEITGAVYPYEHMPSWTPPTSSVDTMGTIGSKPKTQTDYQREHAKISPCVGHELESQKEIEKRDIDFMYKWIREKSGKK
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