NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1007921

Scaffold Ga0208223_1007921


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1007921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1789
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005531Metagenome / Metatranscriptome397Y
F014142Metagenome / Metatranscriptome265Y
F066779Metagenome / Metatranscriptome126Y
F105172Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208223_10079212F105172GGAGMTLELNDYGLEFDTYVCYIALSWQVLIPATIALIAYKIYKRKKNN
Ga0208223_10079214F005531AGAAGMTITYSLWQGSQLLSVNNKASNSEEILSVMKELEKLGKGFSFIVREVEVK
Ga0208223_10079215F014142GGAGMNSISVIVEPSHPMASSNTKDKNIFRLANGNYISRIAYVHMVASEGLISHRYLSPNESRWVMENRVR
Ga0208223_10079216F066779AGGAMFSLSYKVQYSDTEFSTCLGVLMNTEQDANKYLDLLSERGTILECSLRELENYTPSKRVVIATTRSWE
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