NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1010704

Scaffold Ga0208223_1010704


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1010704 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1453
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009000Metagenome / Metatranscriptome324N
F028493Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0208223_10107041F028493N/AVCPKAKTISAVQISSGQTVRINPSCYIRTMDHIITADDSEEITIHSKWLDWTWTLGQLFKQEESAVVASAIAQLRTRISGRFDAEVLINELATMTKEAKELAKEAPFNHWIFTSPGAMIGATLVCIFILFCCWRVCRDNNNNTAQPVPYPTAPMAPPTIYNMTVDPIRR
Ga0208223_10107042F009000N/AMDNGNGNPTPGGSGTGRTVPVQAQNVVIDANAQAAAAQMAQQILANTNVTLKQELVKIPDFWGEKGKDTVTPTQFMARIDECQIANDWNDTTTYANFSLCLRGEADEWLASKVRLLELTPAQKTWTRIRP
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