NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1024538

Scaffold Ga0208223_1024538


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1024538 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)807
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F005504Metagenome / Metatranscriptome398Y
F007468Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0208223_10245381F005504N/ALTLEYEEETGWGGELEIVRGEVKEILDYETRCYACQSYDCVEYCENDCGQFCSECNEGSWRDEEAMKECQTHMVLLDTTEKAEA
Ga0208223_10245382F002387GAGGMSDPHGIIGYYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLDDWINSNLDEGQYYADKQFAEMSGDKFIYDEFNKFYNLKEGDEDYLC
Ga0208223_10245383F001460GAGGMLGYTENDLNRMINAVHDAKLFYLRYPSDLMDKTELRNDLEMAVSFMQGLWAEGYFDHTN
Ga0208223_10245384F007468GGAGGLTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNSS

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