Basic Information | |
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Taxon OID | 3300020525 Open in IMG/M |
Scaffold ID | Ga0207938_1001381 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 05MAR2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4793 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009202 | Metagenome / Metatranscriptome | 321 | N |
F010908 | Metagenome / Metatranscriptome | 297 | Y |
F024249 | Metagenome | 206 | N |
F025437 | Metagenome | 201 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207938_100138110 | F010908 | AGAAG | MRQIFSPFQKYECFAVDGTDYLVLDYTIIQDKDDNLVEWASEMKFKRLSDHKHYTMPMTKIITNYNEGRAKRCKC |
Ga0207938_100138111 | F009202 | N/A | MKPLRAMYPSDDSHDLYIREKQLMLAGTAMWLAQQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRVDSEQMHYEIQRLQGIIEDNL |
Ga0207938_10013813 | F024249 | N/A | MIFTYNDLKFWLEDADLLPQSYWDALEDYNPDDKNSDEILAKWLGFAHVADFYEYEMQITYIEESYNEDGYTNTTAYPTTSIYRDIPNLADDIYTKWMNWATQVASEE |
Ga0207938_10013819 | F025437 | N/A | MRPFELRQLKVSKEQYFARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIEKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVAELSKYKELYLTLKRTFDEF |
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