NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207938_1001381

Scaffold Ga0207938_1001381


Overview

Basic Information
Taxon OID3300020525 Open in IMG/M
Scaffold IDGa0207938_1001381 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAR2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4793
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009202Metagenome / Metatranscriptome321N
F010908Metagenome / Metatranscriptome297Y
F024249Metagenome206N
F025437Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0207938_100138110F010908AGAAGMRQIFSPFQKYECFAVDGTDYLVLDYTIIQDKDDNLVEWASEMKFKRLSDHKHYTMPMTKIITNYNEGRAKRCKC
Ga0207938_100138111F009202N/AMKPLRAMYPSDDSHDLYIREKQLMLAGTAMWLAQQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRVDSEQMHYEIQRLQGIIEDNL
Ga0207938_10013813F024249N/AMIFTYNDLKFWLEDADLLPQSYWDALEDYNPDDKNSDEILAKWLGFAHVADFYEYEMQITYIEESYNEDGYTNTTAYPTTSIYRDIPNLADDIYTKWMNWATQVASEE
Ga0207938_10013819F025437N/AMRPFELRQLKVSKEQYFARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIEKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFQSLELELNKLNEVVAELSKYKELYLTLKRTFDEF
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