NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1000232

Scaffold Ga0208232_1000232


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1000232 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12657
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007416Metagenome / Metatranscriptome351Y
F088512Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_100023210F088512N/AMGSISPRHIIEAVLDTFLTAETGLAGVAVYTGDNAEINVLPKCVVLCDSARTPPELPEGAGNYYCSVRVTLFSNADDTTLTQHRDRCAAIAGSMADIAGIKAAFLAGGDAKCYDVIPDSEDEGRDERSWATVLSYTVPVVVNPTP
Ga0208232_10002323F007416N/AMQGLFIGLSEDELLAIKAKAVSMIMEGKVLMSYADSGSSSTKQFALPPKEMLAECMGALSLLDPQRYGRRRNVINTRYDNRNNDSQHGI
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