Scaffold Ga0208232

Basic Information
Taxon OID	3300020527 Open in IMG/M
Scaffold ID	Ga0208232_1000233 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020527 Open in IMG/M

Scaffold ID

Ga0208232_1000233 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12586
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (6.25%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12586

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (6.25%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007751	Metagenome / Metatranscriptome	345	Y
F010084	Metagenome	308	Y
F010836	Metagenome / Metatranscriptome	298	Y
F011075	Metagenome / Metatranscriptome	295	Y
F029655	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100023310	F011075	N/A	LGIIKIENMSSFETHLGIIVGSHLNDAMIEISINPKLAKQRMKFVKALTFFNEDLTKGVTDEYCDWLWNELFENQRWGGPYIKGTNYETK
Ga0208232_100023313	F010836	N/A	MATSNFHNVNASAIFAVPLENEYDYEDLVCNLESELGNNPDYVDYGKTDKNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYAINGDIYDIDELENGIGYNTALPISKIKVYSSLAEKKAEKLKNDIVEKLEALYNNYSDRYGVTAVFSNGETIYHKL
Ga0208232_100023314	F007751	N/A	MVKQFITNFKIKNMNQILELKSVIGKEVSQNQSPTCRARLVSVGKSNCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFF
Ga0208232_100023324	F029655	N/A	MNKLVFSVNESNCVKFLKKYPMVTHLMVQSKGKDMMSAYKKFLKLKDMNESKLGGRGECIGSVSFGTKTFYKYDWDSCTGWAEVFQFVYNYNKNNK
Ga0208232_10002338	F010084	N/A	MHITEDVIYHLSKNIKTKIGVSSIDGIGVFAIKDIKKDEQVFPIWEGDSFMYAIPNERLSDIPTEVLELLDMYFINDDFGFKIIRLFKGMNFLFHGTSFCNSAWPNKEDTNIDITGIALRDIKAGEEILEWYTKNIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208232_1000233

Overview

Ecosystem & Geography

Associated Families

Sequences