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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020527 Open in IMG/M |
| Scaffold ID | Ga0208232_1000337 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9950 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000903 | Metagenome / Metatranscriptome | 843 | Y |
| F003182 | Metagenome / Metatranscriptome | 502 | Y |
| F003195 | Metagenome | 501 | N |
| F012452 | Metagenome | 280 | Y |
| F016643 | Metagenome | 245 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208232_100033714 | F016643 | N/A | MSIFNPIWRVRIGGVEYTNFALANLSITSGRTNIYEQANAGYVNLQLINLDQSIIDIEINDAVSIELQDSTNTFVPIFGGTVVEFDINIAASGVVAINQSVSIIALGALSRLPKSLTEGVLVKDNDGDQIYSVLADLLLNTWNEVPAALQWNTYEPTTTWANAENIGLGEIDRPGEYELAKRNASTIDVYSLVSALATSGLGYIYENAQGQISYAAALHRSIYLATNGYTDVSASQAIANSLSIQTRSGDIRNDITLKYKENSTLEVTDSDPASILAYGPLAQIITTTIENQTDAEDQAAFYLGLRSYPQANFRQITFELTNPEIDDSDRDSLINIFMGLPLRINDLPLNMSAGTYLGFVEGWTWRAAYNTVSVTAILSPLAFSLQAMQWQDVSAAETWNSISGSLDWATALVVA |
| Ga0208232_100033720 | F003195 | N/A | SAEQTILPLLTQYQSSVTFANVSDSVIYFTTMRPNYFVPGQSVVVTGAGIYNATYTVTDDRIEPYTFTAATAAADRTYPLPFIPAATATLSGASAAQLYASTPPIENAILVVAVEIFQSITAPGNQIMSDNFQPSPFILGRSLSNRVIGLLGPFLDVETMCQ |
| Ga0208232_10003373 | F003182 | GGAG | MHILQFDCSICAKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARITEMSL |
| Ga0208232_10003374 | F000903 | AGGA | MIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAELVVAKRLGYEYTPGITWDKSKADVGEHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNAPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPSI |
| Ga0208232_10003377 | F012452 | AGG | MAGFLENYEGNKERTDRWLRTFPHGRLEAHIIEFNAEKGYVLVQAKAWRNQEETEPAGIDFAFGYREAYNPNMKRWFCEDTVTSALMRVMALVMGGTEKATKETMEQVKINDATKPQDYDYWTTKFGDVPSYKTAGEAEQAGIPSLGSSMDEIAKQLGGELVQEAPQCRHGHRVWRTGTSAKTGKDWANYSCVGKKPDQCEPLWYVFTSDGTWKPQV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |