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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020527 Open in IMG/M |
| Scaffold ID | Ga0208232_1000358 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9578 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (19.23%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000785 | Metagenome / Metatranscriptome | 891 | Y |
| F001754 | Metagenome / Metatranscriptome | 641 | Y |
| F013298 | Metagenome / Metatranscriptome | 272 | Y |
| F017998 | Metagenome | 237 | Y |
| F031098 | Metagenome / Metatranscriptome | 183 | N |
| F038234 | Metagenome | 166 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208232_100035813 | F001754 | GGTGG | MTLSLCSKGDGKIPPYQMIKNYNMNTIYNNFAPSKMSNNPKFSVMVEFTDFLGNQHRIVCNNRRKLAEANEFLKMFKSESTKINKILGEYPVVMGQFPKKYHKEIKMELASAGFSKVSNFLIK |
| Ga0208232_100035817 | F013298 | N/A | MNVREFYVKNYPSDDMGDGINPQATFDGLVHALSNCQDVYEYLYVYDSIIRERLFEKLSLILNCEYEVIYQQWLSPIKKPLIKK |
| Ga0208232_100035819 | F000785 | AGGA | MRVTNKRGMKFDCNRLMRWAEEKLGPSKCNTIAFTWDLEEESLGWYDWNNIIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKLNPYEIEARENEKLVKRAYKKQK |
| Ga0208232_10003583 | F038234 | N/A | MLTIKNIDSLKGTYIGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETDNRHYLPIESIKNSYTFIRFLIDELI |
| Ga0208232_10003584 | F017998 | N/A | MNLERLDLEKYEVLEQERNNTIADPLYQQWMSELGVSSSYSDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSILR |
| Ga0208232_10003587 | F031098 | AGTAG | MKTYYDIAIHTASKDVVNIKGVSYSQMMKIANDNPNLEKIEILKEYEKKTYR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |