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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020527 Open in IMG/M |
| Scaffold ID | Ga0208232_1000571 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7302 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (77.78%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001515 | Metagenome / Metatranscriptome | 679 | Y |
| F001531 | Metagenome / Metatranscriptome | 676 | Y |
| F006739 | Metagenome / Metatranscriptome | 365 | Y |
| F008808 | Metagenome | 327 | Y |
| F018684 | Metagenome / Metatranscriptome | 233 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208232_100057111 | F018684 | AGGA | MEEWKLQVSYKTPAGDMINVRANTADELSVLLEGVGDYSTQVAAVQRLVVGAYNAAPLGTTPSTPSTTQFTSSAPSQGQGPSLTPPPSAVTPSGTASPTCIHGARIFRQGVSKASGKPYAFWACPTPQGTPDQCKPVN |
| Ga0208232_100057118 | F006739 | N/A | PVYCYDVETDRYNVQVGYEGRAFDRIAQLESIEENGDVVTWQDLTTGESRQAVIEQISFTRLTPPDRGFTGYGGVIDITIRTV |
| Ga0208232_10005713 | F001531 | GAG | MNWQQIEPWEYVITAVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGNKDAKNLIYRSLRNHALDYCQRWKAKSVGYDVSDIYYYEADVVEALLPAVLRSEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAVKRLVNKLGGFKPFYDNDIMEPTETEPSEDSSYQELGTPQESEQ |
| Ga0208232_10005714 | F001515 | N/A | MTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNLSKGFLITVDDLMSATRLYKRAKADELATN |
| Ga0208232_10005716 | F008808 | GGA | MKNKINPCPECGQHFDNVFEATDHLLEDDEEFDPALVLPNGYRLMIGSLLRCMYRYAEQPEQIRTITQDTYMTLFSAETDPGTVLEVIEDMIVGSSMVGIDDELKQLLEDGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |