NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1000606

Scaffold Ga0208232_1000606


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1000606 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7016
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004476Metagenome / Metatranscriptome436Y
F024112Metagenome207Y
F095475Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_100060613F095475GGAGGMKNKFAGRCCYCACSVDAGEGRCWRWDEVKKWFVACEDCFVEQKEERKRNK
Ga0208232_100060617F004476AGAAGMLFSKNGFMSVDTTEAFVKQALEFGNKDVVLSVVHENGVIDIVFSPTMDAIEAEVYHFLNDGTELKYSMPIKTLTDNNISTLHLTSAIYAYLSEAFKVADMFRSTTRQSTDYAN
Ga0208232_10006067F024112N/AMAYTIGVRNKEMKIEDYDKERATVLNALYCSVRSAIQTENLHNNTRIEWIEDDFKVAQKKLEAIEAEMRVLLGDPFAEEVK
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