NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1000666

Scaffold Ga0208232_1000666


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1000666 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6669
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038232Metagenome / Metatranscriptome166Y
F078718Metagenome116Y
F092057Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208232_100066613F038232GGAMNKIDGDQLRNNLEKLLPNCSFDEDNEGQVIIYTNLKETTNGNYKELK
Ga0208232_10006663F092057AGGAGGMPLSYDITKIAMYKDNYDEAYQEYNQLGSTYTDVKPFLKGLIFSGGMVALSSITFKNVGEWYARLKLCEEMYHTYLTSKFDEEKNEWVNVPLEAKEIVKYIGLATNNSTVVRNKWVQNVKRNQTVDLTTTQMLARLKKLEEKFEREVFQ
Ga0208232_10006664F078718GAGGMIKPGQANMYPRVSDWYETNVIEYRENSAFDKWYIEVVYFEADAEYSYGAGKTKALSGGYQRVEITDKLSGNFWEDAFLGETAHQDIERWANDIVNKIKHGRVKV
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