NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1000691

Scaffold Ga0208232_1000691


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1000691 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6561
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F006107Metagenome / Metatranscriptome381N
F032255Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10006917F032255N/AMANSQGLAYQFGSPASVTMLDTDNSTPIFTALASIESYDLTHEADTEEVRNSGGEVVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVSITGAPVIKMMGVADVLNSGRFIYAGGGSVKMTQSGKAMVSITVKRFKNLTTAAAVALNV
Ga0208232_10006918F006107GGAMNAVALRAELAVADYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDAGASALDAASNDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL
Ga0208232_10006919F005024GAGGMTVDSSKFDAAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRISDYLGTPVGDINRKSKKTGKRIGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSAKWKPLSKPPGYKAPKQTNAALVSLANQYGLNEENVATHKGTKARGFQAVPGFNPTASVVMTAGIADSQYNRVAGIYNTAMQKAFDDETTEMINHMTEALLANGKVLEDNGISIK
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