NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1000759

Scaffold Ga0208232_1000759


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1000759 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6203
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007751Metagenome / Metatranscriptome345Y
F010084Metagenome308Y
F010836Metagenome / Metatranscriptome298Y
F011075Metagenome / Metatranscriptome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10007592F007751N/AMNQIEELKSVIGKDVSQNQSPTCRARLVSVGKANCIFESVPSPYDKFPKPEFVGVKYKVPNWIAWNSFFY
Ga0208232_10007593F010836N/AMATSNFHNVNASAIFAVQLENDFDYEDLVDNLKSELKDNSDYVDYGKTDQNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDVSYDSPDFYIDDIAYCGNLSKSAATKYAKLAEKKAEKIKNEIVDELESLYNDYSEKYGVTAVFSNGETIYHKL
Ga0208232_10007595F011075N/AMNRSEFEVNLSIIVGSHLNDAMIEVSVNPQLAKKRLKFVKAITFFNEDLTKGVTDEYCDWLWNELFENQRWGGPYVKDSNYVI
Ga0208232_10007597F010084N/AMDITEEVIKHICINIKTKIGVSSIDGVGVFAIRDIKQYEEVFPIWDNETGIYLIPNDRLSEMPKEVIELLDKYFINDECGYKVIRLFKGFNFIFHGFSYCNSAWPDENKVNITNNGIAMRDIKAGEEILEWYYKNINLDKSK
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