NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1001755

Scaffold Ga0208232_1001755


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1001755 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3919
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F002038Metagenome / Metatranscriptome600Y
F058813Metagenome134N
F098917Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10017552F058813GAGGMEPMSAPTLVLVSGFARAGKDTLAEGILEWSRRPSRKTSFAAHLKDAANDYLWSLNLEGDFHNEAFKCKHRDLLVTLGKFARSLNPDVFAENLAHFVPIQMGPDEVAPETVVVSDWRYINELRVSQSILWNLGWKVRTVYVSTAGIGPANDEELDSICEIKQFHSFDQEFVFAPNSRQCILAEGRHLAKTWNL
Ga0208232_10017554F001338N/AMTTENNERTPLTSISQNGTYKLKLIRPKGTDKVKVWEDGTASARLFFVDDKGFCLSKNFSTKYGKALAMLVGKFSGKYTNEIRLDATPAEYLEYISPACGQTILVGVEVEPNGEWQGKPQYKYKMTYPRGSQSPVVSEPIPDNPPF
Ga0208232_10017557F098917N/AMTNRDYLRNLLGQLAGEVAALRPTPEDSARIAGDDLYQLQVAINEAAEELARLDAENIEEAYDIKPIYDRVKAVIAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHNPGDDDASL
Ga0208232_10017558F002038GGAGGMADLPKGIEKIAATVRNQYALLLFLDGFPYVEMTARKSADFMTDLNAWKRKTYPSLSRSNVRFFTLAPNGEVKELTFTK
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