NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1003623

Scaffold Ga0208232_1003623


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1003623 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2642
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F021758Metagenome / Metatranscriptome217Y
F088343Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10036232F021758AGGAMDQGRSREEGFGCIMKVIKLDRRYSGYGTWTHRTNGGYWQGEEARAKGLMSFYEMRCYMTQMNGPGCFIHEAWAIKKHGQAVPDWAWDTDGNVFFRDSALVNFTLAKDRWQ
Ga0208232_10036233F002052AGGAMSRLYTFVFTVECASTGSPDLSRAEEMIHLNMQELVYDDEFIAALDEKESVTIQVNLVK
Ga0208232_10036237F088343N/AMYDFTTLTQTQKDAMQALVNKYAHVEGSYESTMLGGIVHAYCDSGILTDAYSTADAELVAMYFTQEAQDSGYLELFNSFIAEVHGEELLCCKVVDEMCAIIDDVELASAYIGKLTNTIMEHCYTD
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