NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1004602

Scaffold Ga0208232_1004602


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1004602 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004924Metagenome / Metatranscriptome418Y
F010227Metagenome / Metatranscriptome306Y
F096603Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10046021F010227AGGAGMQATQFEVSDKLTLATTDTSEDSISTTYDCNIEVQLAGDSIWDCEIEAVTVTSVHIHEQWWDELDGDSSIHITVCYNVDGDAEYEGSWRLYTDSGFVDAISTLLGTDVMFTEQGMQDDGYASMEL
Ga0208232_10046022F004924AGGAGMKEAILAKLAEVEAMLLEASCDGEQLAELECFGDMESPLNMLVQAVDYYVD
Ga0208232_10046025F096603AGGAGMEWLDFVLGAALGGFLGFKVAEHIHVTMFKDILIKLKVKDSDMRNMMQDLQKDLPEDHEDAMPRIEVRVEKVNDQLYVYRLDTMEFLCQGANREAVLACLSDRFHKDFTIVLSEEHGAQFLKESPRT
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