NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1005337

Scaffold Ga0208232_1005337


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1005337 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2127
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005742Metagenome / Metatranscriptome391Y
F007116Metagenome / Metatranscriptome357Y
F061836Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10053372F005742N/AMNVTQLKNIMKEVNEPNEFELFAYDLVHPYFWIFKVDNVRIKTLFTKLEEFRRPSARFDVFINGLFISENDYYFENKGNDFYINFIKAKFPELDRFGNPYSIDESDEVKINGDVEKFTKN
Ga0208232_10053373F007116N/AMGRTVPNIDINSTQKLRDRVGFKDFVLQVATDTFIYSYNPNTIQVADGIYFTLTLQNKRFIFDILELDNVKDYIDVYLFGVKQPQDRYTALVDGNNIVVTFVADITRLPNEVKTTDFEIKGKIAEIV
Ga0208232_10053374F061836N/AMARLIPRKQIEEQQNISGSFRVGEDINIGNNTVISGSIFVSQSFFFGSATSSRNEITGSVFLTGSLVIDGELRTSAPNTILSVTSS
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