Basic Information | |
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Taxon OID | 3300020527 Open in IMG/M |
Scaffold ID | Ga0208232_1007889 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1701 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001754 | Metagenome / Metatranscriptome | 641 | Y |
F013298 | Metagenome / Metatranscriptome | 272 | Y |
F066783 | Metagenome / Metatranscriptome | 126 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208232_10078892 | F001754 | AGG | MNTIYNNFAASKMSNNPKFSVMVEFTDFMGNQHRIVCTNRRKLAEANEFLKMFKTESTKINKILGEYPVVMGQFPKKYHKEIKMELASAGFGSVAKFLIK |
Ga0208232_10078893 | F013298 | N/A | MGTFYFKLTTMNIREFYVKNYPTDDMGKGINPNATFDGLWNVLNTYGDVYEYLYVYDSIIRERLFEKLADNKGCKYDVIYYQWLKSA |
Ga0208232_10078894 | F066783 | N/A | MNQTTEKLVSIFTQNELSALMTAMGGYINTKNKQKRPTGVETVLFNKIVDALLVCNYMNAVEMVNTKTNRMGAAEYKMSEAQLEAMYESDVRAHS |
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