NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1008136

Scaffold Ga0208232_1008136


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1008136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1668
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005589Metagenome395Y
F105158Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10081361F105158GGAGGVENLPKNQKEHYHNKIRDWEKRTGKSMNVKGVSKIYDCNIEDAEYNTPAAMNMMKVHGCYIYYDLMTEEDIRSNGTNWLKYSYAHVNGKTYKYYYETKQWGQEIDEITLDRYNYTKWKAAKLDKTNFPYTLDPGEDYLPYALENKHIGSKFDDFAKENNIELKRDINWAVKMLEH
Ga0208232_10081363F005589GGAMGKFRHSFWRYIPSTDERQSFFKFVESFETDSDAVPKFDDHYCIDHIFDTANGQMRVKNHSAPEYCVSKYVGWSLNLPPVEKTNKQEIYMVIHRSSFTHKKIEFDEFLEPKNKRYTQEEWELLLSSIEKKFNRQKEWAKDGIKIPTQYEDGTQVFKTEEEFRAFSLGRRAYFLFHLVRNYNFTHLVHRLNIGYTSG
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