NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1009853

Scaffold Ga0208232_1009853


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1009853 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1487
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F006107Metagenome / Metatranscriptome381N
F085372Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10098531F006107GGAMNAVALRAERALVDYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDTLILPLFDDTGASALDAAANDASGPFTAQFAAPLDFGASSISNRSR
Ga0208232_10098532F005024GGGGGVKFGVNMTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGTSRILRRVHLIAQAKAAKNPTANLNGGHGLYGKRMKAAASALMKRSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPASYRAPKKTNSALVAMANEYGLPQENVGIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVSEIYNTAMQKAMDDETAEMVNHMTEALLANGKVLEDNGISIK
Ga0208232_10098533F085372N/ASMDSTLYTLDQGTTFSRLLKEDGQFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
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