NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1011892

Scaffold Ga0208232_1011892


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1011892 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1330
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002621Metagenome / Metatranscriptome542Y
F002843Metagenome / Metatranscriptome526Y
F015720Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10118922F002843N/AMIVPVNIVAVQVNQNNSLFVTTGVDYDSDGAVVGSEITSQYTLNPGDSLEGQPVEVVNIANALWTPAVVAAYKAANPVVEAVQPTE
Ga0208232_10118924F015720AGGMKNTKTTLAGVGAILIAIGGALKAVFDNDPTTNLDLTTTIAAVTAGIGLIWAKDAKEVEAPKP
Ga0208232_10118925F002621GAGMFNTVKHLNPSRMIWLAVLPICLGCQQTKVVLVPSGDPVMLAKPVQASVYGFDADKKLVGPSRVTLPAG
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