Scaffold Ga0208232_1012018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208232_1012018

Scaffold Ga0208232_1012018

Overview

Basic Information
Taxon OID	3300020527 Open in IMG/M
Scaffold ID	Ga0208232_1012018 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1320
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F008552	Metagenome	331	Y
F013087	Metagenome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10120182	F001561	GGAG	MQTREQKLLYLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMYDYHDADSWENMIWLMWSMAVNKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMYIDEKLAIRYYESAIRWKDAPESTHHSLISLCSKLNDKRMAIGYCKMTLAKFPNDVWTKSKLKTL
Ga0208232_10120183	F013087	N/A	MDSTTWIFFSKTGTGYELKGSDVVSGFDAFINSDKTYMIEYAYSDIKESMHFFIYEWDNSQKKRRTIFEGLQREIVLLSFVKNVNVTHNMRQEVFKQYYKTDEELELEKNANS
Ga0208232_10120184	F008552	N/A	MEYDPELFSDIKENLTEISKNEPLSFKLDTNDVKLLQGAFHNIRRIICIPDVEQNKFTDVLKREFDTSTFKKFKQCKLHIDKDYFYFTGNYETGNNPIEFQSLNFDTRFIESLEYKYKKHQESVVN

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