NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1018140

Scaffold Ga0208232_1018140


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1018140 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10181401F030094GAGGMKLRGIFEGTFESVWSMDVPDQLWNLYLLHNPDFDENDRDDIQEMWDHFKSLGCYDEIDDTVDTDVIMTGIETYGVEVEV
Ga0208232_10181402F093864GGAGMYNYNVEFVLEAMVMITSVSFDEPDLPDDFIIQEARNNIMSYYKIDPEVLHLQDVIVHEV
Ga0208232_10181403F016662AGGAMTYLVATTEVIYDEQDLIKMMLDTGEYGIHGHPISHEAMIEFVKDQEWQIEHHLFLDKFDVPAQISIKDEDGTDLFFAKNKLEIK
Ga0208232_10181404F043404AGGAMIDTNDELLNELAYHFVDLHNVGGIELEQWDTAYQFVKHFYNTEEVVEIRIGSKKV
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