NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1021520

Scaffold Ga0208232_1021520


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1021520 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)918
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015209Metagenome256N
F015472Metagenome254Y
F039133Metagenome164N

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10215201F015209AGGMRDYRIKALSLWSNLLAEERWHKFESPNCKPLCKGWNGWARYCECGSNFCTFKPNGELADMVLVIEARPSEF
Ga0208232_10215202F015472AGGAGMAHTYLNQGGTRWASDSKILVTGFFNGKRYYKMRKPMYWEQFGNFARCYVRVGDNVFRGATEDSNGVIELKLEKCYRVR
Ga0208232_10215203F039133N/AMNTTDKVIVRFKSRVPKMLYTAHYNGLLLGTGRDPIDLGEFYASKYSTEWILHDGNNFYTQRGVNI
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