NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208224_1000561

Scaffold Ga0208224_1000561


Overview

Basic Information
Taxon OID3300020528 Open in IMG/M
Scaffold IDGa0208224_1000561 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6723
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043782Metagenome / Metatranscriptome155N
F071985Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208224_10005615F071985N/AMKELEDFKFSSRIEVSDELANKLALISNQSRAPIMQFYYAAAAIVLLISINVFAVLYSNQTKKINIENTEYFEEWT
Ga0208224_10005616F043782N/AMRRYKAIIWILVIINIGLISFMFLQHRTYQRPRIVKILTIDETRESEINRMEIIHFKEKKKLIDKSKKLRAKLLFSFENEIPESQADSILHLISDNQYELDKMTYLFFKDIKSKCSVKEREKLNDFFTRVLEEGPRHKK
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